Significant alteration of gene expression in wood decay fungi Postia placenta and Phanerochaete chrysosporium by plant species.
Identifieur interne : 002D12 ( Main/Exploration ); précédent : 002D11; suivant : 002D13Significant alteration of gene expression in wood decay fungi Postia placenta and Phanerochaete chrysosporium by plant species.
Auteurs : Amber Vanden Wymelenberg [États-Unis] ; Jill Gaskell ; Michael Mozuch ; Sandra Splinter Bondurant ; Grzegorz Sabat ; John Ralph ; Oleksandr Skyba ; Shawn D. Mansfield ; Robert A. Blanchette ; Igor V. Grigoriev ; Philip J. Kersten ; Dan CullenSource :
- Applied and environmental microbiology [ 1098-5336 ] ; 2011.
Descripteurs français
- KwdFr :
- Analyse de profil d'expression de gènes (MeSH), Bois (microbiologie), Coriolaceae (croissance et développement), Coriolaceae (génétique), Expression des gènes (MeSH), Phanerochaete (croissance et développement), Phanerochaete (génétique), Pinus (microbiologie), Populus (microbiologie), Protéines fongiques (isolement et purification), Protéines fongiques (métabolisme), Spectrométrie de masse (MeSH).
- MESH :
- croissance et développement : Coriolaceae, Phanerochaete.
- génétique : Coriolaceae, Phanerochaete.
- isolement et purification : Protéines fongiques.
- microbiologie : Bois, Pinus, Populus.
- métabolisme : Protéines fongiques.
- Analyse de profil d'expression de gènes, Expression des gènes, Spectrométrie de masse.
English descriptors
- KwdEn :
- Coriolaceae (genetics), Coriolaceae (growth & development), Fungal Proteins (isolation & purification), Fungal Proteins (metabolism), Gene Expression (MeSH), Gene Expression Profiling (MeSH), Mass Spectrometry (MeSH), Phanerochaete (genetics), Phanerochaete (growth & development), Pinus (microbiology), Populus (microbiology), Wood (microbiology).
- MESH :
- chemical , isolation & purification : Fungal Proteins.
- genetics : Coriolaceae, Phanerochaete.
- growth & development : Coriolaceae, Phanerochaete.
- chemical , metabolism : Fungal Proteins.
- microbiology : Pinus, Populus, Wood.
- Gene Expression, Gene Expression Profiling, Mass Spectrometry.
Abstract
Identification of specific genes and enzymes involved in conversion of lignocellulosics from an expanding number of potential feedstocks is of growing interest to bioenergy process development. The basidiomycetous wood decay fungi Phanerochaete chrysosporium and Postia placenta are promising in this regard because they are able to utilize a wide range of simple and complex carbon compounds. However, systematic comparative studies with different woody substrates have not been reported. To address this issue, we examined gene expression of these fungi colonizing aspen (Populus grandidentata) and pine (Pinus strobus). Transcript levels of genes encoding extracellular glycoside hydrolases, thought to be important for hydrolytic cleavage of hemicelluloses and cellulose, showed little difference for P. placenta colonizing pine versus aspen as the sole carbon source. However, 164 genes exhibited significant differences in transcript accumulation for these substrates. Among these, 15 cytochrome P450s were upregulated in pine relative to aspen. Of 72 P. placenta extracellular proteins identified unambiguously by mass spectrometry, 52 were detected while colonizing both substrates and 10 were identified in pine but not aspen cultures. Most of the 178 P. chrysosporium glycoside hydrolase genes showed similar transcript levels on both substrates, but 13 accumulated >2-fold higher levels on aspen than on pine. Of 118 confidently identified proteins, 31 were identified in both substrates and 57 were identified in pine but not aspen cultures. Thus, P. placenta and P. chrysosporium gene expression patterns are influenced substantially by wood species. Such adaptations to the carbon source may also reflect fundamental differences in the mechanisms by which these fungi attack plant cell walls.
DOI: 10.1128/AEM.00508-11
PubMed: 21551287
PubMed Central: PMC3127733
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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The basidiomycetous wood decay fungi Phanerochaete chrysosporium and Postia placenta are promising in this regard because they are able to utilize a wide range of simple and complex carbon compounds. However, systematic comparative studies with different woody substrates have not been reported. To address this issue, we examined gene expression of these fungi colonizing aspen (Populus grandidentata) and pine (Pinus strobus). Transcript levels of genes encoding extracellular glycoside hydrolases, thought to be important for hydrolytic cleavage of hemicelluloses and cellulose, showed little difference for P. placenta colonizing pine versus aspen as the sole carbon source. However, 164 genes exhibited significant differences in transcript accumulation for these substrates. Among these, 15 cytochrome P450s were upregulated in pine relative to aspen. Of 72 P. placenta extracellular proteins identified unambiguously by mass spectrometry, 52 were detected while colonizing both substrates and 10 were identified in pine but not aspen cultures. Most of the 178 P. chrysosporium glycoside hydrolase genes showed similar transcript levels on both substrates, but 13 accumulated >2-fold higher levels on aspen than on pine. Of 118 confidently identified proteins, 31 were identified in both substrates and 57 were identified in pine but not aspen cultures. Thus, P. placenta and P. chrysosporium gene expression patterns are influenced substantially by wood species. Such adaptations to the carbon source may also reflect fundamental differences in the mechanisms by which these fungi attack plant cell walls.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">21551287</PMID><DateCompleted><Year>2011</Year><Month>10</Month><Day>12</Day></DateCompleted><DateRevised><Year>2018</Year><Month>12</Month><Day>01</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1098-5336</ISSN><JournalIssue CitedMedium="Internet"><Volume>77</Volume><Issue>13</Issue><PubDate><Year>2011</Year><Month>Jul</Month></PubDate></JournalIssue><Title>Applied and environmental microbiology</Title><ISOAbbreviation>Appl Environ Microbiol</ISOAbbreviation></Journal><ArticleTitle>Significant alteration of gene expression in wood decay fungi Postia placenta and Phanerochaete chrysosporium by plant species.</ArticleTitle><Pagination><MedlinePgn>4499-507</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1128/AEM.00508-11</ELocationID><Abstract><AbstractText>Identification of specific genes and enzymes involved in conversion of lignocellulosics from an expanding number of potential feedstocks is of growing interest to bioenergy process development. The basidiomycetous wood decay fungi Phanerochaete chrysosporium and Postia placenta are promising in this regard because they are able to utilize a wide range of simple and complex carbon compounds. However, systematic comparative studies with different woody substrates have not been reported. To address this issue, we examined gene expression of these fungi colonizing aspen (Populus grandidentata) and pine (Pinus strobus). Transcript levels of genes encoding extracellular glycoside hydrolases, thought to be important for hydrolytic cleavage of hemicelluloses and cellulose, showed little difference for P. placenta colonizing pine versus aspen as the sole carbon source. However, 164 genes exhibited significant differences in transcript accumulation for these substrates. Among these, 15 cytochrome P450s were upregulated in pine relative to aspen. Of 72 P. placenta extracellular proteins identified unambiguously by mass spectrometry, 52 were detected while colonizing both substrates and 10 were identified in pine but not aspen cultures. Most of the 178 P. chrysosporium glycoside hydrolase genes showed similar transcript levels on both substrates, but 13 accumulated >2-fold higher levels on aspen than on pine. Of 118 confidently identified proteins, 31 were identified in both substrates and 57 were identified in pine but not aspen cultures. Thus, P. placenta and P. chrysosporium gene expression patterns are influenced substantially by wood species. Such adaptations to the carbon source may also reflect fundamental differences in the mechanisms by which these fungi attack plant cell walls.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Vanden Wymelenberg</LastName><ForeName>Amber</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Department of Bacteriology, University of Wisconsin, Madison, Wisconsin 53706, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gaskell</LastName><ForeName>Jill</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Mozuch</LastName><ForeName>Michael</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>BonDurant</LastName><ForeName>Sandra Splinter</ForeName><Initials>SS</Initials></Author><Author ValidYN="Y"><LastName>Sabat</LastName><ForeName>Grzegorz</ForeName><Initials>G</Initials></Author><Author ValidYN="Y"><LastName>Ralph</LastName><ForeName>John</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Skyba</LastName><ForeName>Oleksandr</ForeName><Initials>O</Initials></Author><Author ValidYN="Y"><LastName>Mansfield</LastName><ForeName>Shawn D</ForeName><Initials>SD</Initials></Author><Author ValidYN="Y"><LastName>Blanchette</LastName><ForeName>Robert A</ForeName><Initials>RA</Initials></Author><Author ValidYN="Y"><LastName>Grigoriev</LastName><ForeName>Igor V</ForeName><Initials>IV</Initials></Author><Author ValidYN="Y"><LastName>Kersten</LastName><ForeName>Philip J</ForeName><Initials>PJ</Initials></Author><Author ValidYN="Y"><LastName>Cullen</LastName><ForeName>Dan</ForeName><Initials>D</Initials></Author></AuthorList><Language>eng</Language><DataBankList CompleteYN="Y"><DataBank><DataBankName>GEO</DataBankName><AccessionNumberList><AccessionNumber>GSE29659</AccessionNumber></AccessionNumberList></DataBank></DataBankList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2011</Year><Month>05</Month><Day>06</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Appl Environ Microbiol</MedlineTA><NlmUniqueID>7605801</NlmUniqueID><ISSNLinking>0099-2240</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005656">Fungal Proteins</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D055453" MajorTopicYN="N">Coriolaceae</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="Y">growth & development</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005656" MajorTopicYN="N">Fungal Proteins</DescriptorName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D015870" MajorTopicYN="Y">Gene Expression</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020869" MajorTopicYN="N">Gene Expression Profiling</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D013058" MajorTopicYN="N">Mass Spectrometry</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020075" MajorTopicYN="N">Phanerochaete</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="Y">growth & development</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D028223" MajorTopicYN="N">Pinus</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000382" 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Blanchette</name><name sortKey="Bondurant, Sandra Splinter" sort="Bondurant, Sandra Splinter" uniqKey="Bondurant S" first="Sandra Splinter" last="Bondurant">Sandra Splinter Bondurant</name><name sortKey="Cullen, Dan" sort="Cullen, Dan" uniqKey="Cullen D" first="Dan" last="Cullen">Dan Cullen</name><name sortKey="Gaskell, Jill" sort="Gaskell, Jill" uniqKey="Gaskell J" first="Jill" last="Gaskell">Jill Gaskell</name><name sortKey="Grigoriev, Igor V" sort="Grigoriev, Igor V" uniqKey="Grigoriev I" first="Igor V" last="Grigoriev">Igor V. Grigoriev</name><name sortKey="Kersten, Philip J" sort="Kersten, Philip J" uniqKey="Kersten P" first="Philip J" last="Kersten">Philip J. Kersten</name><name sortKey="Mansfield, Shawn D" sort="Mansfield, Shawn D" uniqKey="Mansfield S" first="Shawn D" last="Mansfield">Shawn D. Mansfield</name><name sortKey="Mozuch, Michael" sort="Mozuch, Michael" uniqKey="Mozuch M" first="Michael" last="Mozuch">Michael Mozuch</name><name sortKey="Ralph, John" sort="Ralph, John" uniqKey="Ralph J" first="John" last="Ralph">John Ralph</name><name sortKey="Sabat, Grzegorz" sort="Sabat, Grzegorz" uniqKey="Sabat G" first="Grzegorz" last="Sabat">Grzegorz Sabat</name><name sortKey="Skyba, Oleksandr" sort="Skyba, Oleksandr" uniqKey="Skyba O" first="Oleksandr" last="Skyba">Oleksandr Skyba</name></noCountry><country name="États-Unis"><noRegion><name sortKey="Vanden Wymelenberg, Amber" sort="Vanden Wymelenberg, Amber" uniqKey="Vanden Wymelenberg A" first="Amber" last="Vanden Wymelenberg">Amber Vanden Wymelenberg</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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